Index

_

__init__() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

C

compute_gene_gene_correlation() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

compute_gene_gene_correlation_by_type() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

D

de_genes() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

differential_analysis_dist() (SpatialQuery.spatial_query_multi method) differential_analysis_knn() (SpatialQuery.spatial_query_multi method)

F

find_fp_dist() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method) find_fp_dist_fov() (SpatialQuery.spatial_query_multi method) find_fp_knn() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

find_fp_knn_fov() (SpatialQuery.spatial_query_multi method) find_patterns_grid() (SpatialQuery.spatial_query method) find_patterns_rand() (SpatialQuery.spatial_query method)

I

interactive_motif() (in module SpatialQuery.spatial_query)

M

motif_enrichment_dist() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

motif_enrichment_knn() (SpatialQuery.spatial_query method) (SpatialQuery.spatial_query_multi method)

P

plot_all_center_motif() (SpatialQuery.spatial_query method) plot_cell_type_distribution() (SpatialQuery.spatial_query_multi method) plot_cell_type_distribution_fov() (SpatialQuery.spatial_query_multi method) plot_fov() (SpatialQuery.spatial_query method) plot_fp_heatmap() (SpatialQuery.spatial_query method)

plot_gene_pair_heatmap() (SpatialQuery.spatial_query method) plot_gene_pair_spatial() (SpatialQuery.spatial_query method) plot_motif_celltype() (SpatialQuery.spatial_query method) plot_motif_enrichment_heatmap() (SpatialQuery.spatial_query method) plot_motif_grid() (SpatialQuery.spatial_query method) plot_motif_rand() (SpatialQuery.spatial_query method)

T

test_score_difference() (SpatialQuery.spatial_query static method) (SpatialQuery.spatial_query_multi static method)