Installation

Requirements

Python >= 3.10
A C++ compiler (for the bundled C++ extension)

Install via pip

pip install SpatialQuery

Dependencies

SpatialQuery requires the following packages (installed automatically):

anndata>=0.8.0
pandas>=2.0.3
scipy
matplotlib>=3.7.5
mlxtend>=0.23.1
seaborn>=0.13.2
scikit-learn>=1.3.2
statsmodels>=0.14.0
scanpy>=1.9.5
pybind11>=2.6