Multi-data: spatial_query_multi

from SpatialQuery import spatial_query_multi
spm = spatial_query_multi(adatas, datasets=["dataset1", "dataset2"])

Motif Discovery

Method	Description
spm.find_fp_knn	Find frequent patterns using KNN neighborhoods
spm.find_fp_dist	Find frequent patterns using distance-based neighborhoods
spm.motif_enrichment_knn	Motif enrichment analysis using KNN
spm.motif_enrichment_dist	Motif enrichment analysis using distance

Differential Motif Analysis

Method	Description
spm.differential_analysis_knn	Differential motif analysis using KNN
spm.differential_analysis_dist	Differential motif analysis using distance

Motif-associated Molecular Analysis

Method	Description
spm.de_genes	Differential expression analysis within motifs
spm.compute_gene_gene_correlation	Gene-gene covariation analysis
spm.compute_gene_gene_correlation_by_type	Gene-gene covariation analysis by cell type
spm.test_score_difference	Test covariation score differences

Plotting

Method	Description
spm.plot_cell_type_distribution	Plot cell type distribution
spm.plot_cell_type_distribution_fov	Plot cell type distribution per FOV